So far as I know, new PowerMac or MacPro batteries are not compatible with the MacBook. Is there a particular reason why you need to use a desktop Mac battery in a MacBook?
Since the motherboard batteries in desktop Macs are not rechargeable, the answer is 'no' - draining them will greatly reduce their theoretical longevity in a MacBook.
ps - this means you should post MacBook questions in the
MacBook Forum, as per our posting rules.