[billybob128]

how do i save this in my second F@H core in terminal?

[reader50]

You don't save it, exactly. Instead, use a launch file. Execute this file called fold2 instead of launching folding directly. Write out a plain text file into the fold2 folder, that looks like this:

Code:
#!/bin/sh

./folding -local -advmethods -forceasm -verbosity 9

After writing out the launch file, chmod it in terminal to make it executable:

Code:
Last login: Fri Feb 13 21:35:49 on ttyp2
Welcome to Darwin!
[Minerva:~] root# cd desktop/fold2
[Minerva:~/desktop/fold2] root# chmod +x fold2
[Minerva:~/desktop/fold2] root#

From then on, just cd into the fold2 folder, and launch the launch file. It will remember all the control flags for you.