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Apple puts it other places... They have a non-standard layout for their JDK... It is always in the system classpath, so programs that need it should be able to find the classes... I assume you need it to invoke javac from some place? Like Jasper?
I used to have an app that wanted to know where it was... I created a dummy tools.jar using touch: 'touch tools.jar' and gave it that path... It stopped complaining and it worked fine since the classes were already on the classpath.