With 6 modules of equal size, put 4 on one card and 2 on the other (in the slots closest to the logic board).
Since the 2 Apple modules are already on one card, you could just put all 4 Crucial modules on the other card and save yourself the hassle of pulling the first card out.
If it's not too late to cancel your order, you may want to reconsider and buy 2x1GB instead. The 2 slots further from the logic board have higher latency, adding to the already high latency of the FB-DIMMs in the Mac Pro.